5E92 TGF-BETA RECEPTOR TYPE 2 KINASE DOMAIN (E431A,R433A,E485A,K488A,R493A,R495A) IN COMPLEX WITH AMPPNP date
authors Sheriff, S.
compound source
symmetry
R_factor
R_Free 0.2312
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.08
ligand ANP, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structures of apo and inhibitor-bound TGFbetaR2 kinase domain: insights into TGFbetaR isoform selectivity., Tebben AJ, Ruzanov M, Gao M, Xie D, Kiefer SE, Yan C, Newitt JA, Zhang L, Kim K, Lu H, Kopcho LM, Sheriff S, Acta Crystallogr D Struct Biol. 2016 May;72(Pt 5):658-74. doi:, 10.1107/S2059798316003624. Epub 2016 Apr 26. PMID:27139629
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (5e92.pdb1.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 5E92
  • CSU: Contacts of Structural Units for 5E92
  • Structure Factors (1513 Kb)
  • Retrieve 5E92 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5E92 from S2C, [Save to disk]
  • Re-refined 5e92 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5E92 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5E92
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5e92] [5e92_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5E92: [STYKc ] by SMART
    • Other resources with information on 5E92
  • Community annotation for 5E92 at PDBWiki (http://pdbwiki.org)

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