5E94 Membrane Protein date Oct 14, 2015
title Antibody-Bound Glucagon-Like Peptide-1 Receptor Extracellula
authors V.Soroka, G.Schluckebier, S.Reedtz-Runge
compound source
Molecule: Antibody Fab Fragment Light Chain
Chain: A, C
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606

Molecule: Antibody Fab Fragment Heavy Chain
Chain: B, D
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606

Molecule: Glucagon-Like Peptide 1 Receptor
Chain: G, H
Fragment: N-Terminal Extracellular Domain, Unp Residues 24-
Synonym: Glp-1r
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Glp1r
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor 0.188 R_Free 0.232
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.201 65.692 88.351 111.61 97.47 91.28
method X-Ray Diffractionresolution 2.00 Å
Gene
Ontology
ChainFunctionProcessComponent
H, G


Primary referenceStructural insight into antibody-mediated antagonism of the Glucagon-like peptide-1 Receptor., Hennen S, Kodra JT, Soroka V, Krogh BO, Wu X, Kaastrup P, Orskov C, Ronn SG, Schluckebier G, Barbateskovic S, Gandhi PS, Reedtz-Runge S, Sci Rep. 2016 May 19;6:26236. doi: 10.1038/srep26236. PMID:27196125
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (185 Kb) [Save to disk]
  • Biological Unit Coordinates (5e94.pdb1.gz) 93 Kb
  • Biological Unit Coordinates (5e94.pdb2.gz) 90 Kb
  • CSU: Contacts of Structural Units for 5E94
  • Structure Factors (1479 Kb)
  • Retrieve 5E94 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5E94 from S2C, [Save to disk]
  • Re-refined 5e94 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5E94 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5E94
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5e94_D] [5e94_G] [5e94_B] [5e94_C] [5e94_A] [5e94_H] [5e94]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5E94: [HormR] [IG_like] [IGv ] by SMART
  • Other resources with information on 5E94
  • Community annotation for 5E94 at PDBWiki (http://pdbwiki.org)

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