5EAU Isoprenoid Synthase date Dec 11, 1997
title 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
authors C.M.Starks, K.Back, J.Chappell, J.P.Noel
compound source
Molecule: 5-Epi-Aristolochene Synthase
Chain: A
Synonym: 5-Epi-Aristolochene Cyclase
Engineered: Yes
Mutation: Yes
Organism_scientific: Nicotiana Tabacum
Organism_common: Common Tobacco
Organism_taxid: 4097
Strain: Bl21 (De3)
Cell_line: Bl21
Cellular_location: Cytoplasm
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_cellular_location: Cytoplasm
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28b(+)
symmetry Space Group: P 41 21 2
R_factor 0.242 R_Free 0.287
crystal
cell
length a length b length c angle alpha angle beta angle gamma
125.960 125.960 122.970 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.15 Å
ligand FFF, MG enzyme
related structures by homologous chain: 5EAS
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for cyclic terpene biosynthesis by tobacco 5-epi-aristolochene synthase., Starks CM, Back K, Chappell J, Noel JP, Science 1997 Sep 19;277(5333):1815-20. PMID:9295271
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk]
  • Biological Unit Coordinates (5eau.pdb1.gz) 89 Kb
  • LPC: Ligand-Protein Contacts for 5EAU
  • CSU: Contacts of Structural Units for 5EAU
  • Likely Quarternary Molecular Structure file(s) for 5EAU
  • Structure Factors (860 Kb)
  • Retrieve 5EAU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5EAU from S2C, [Save to disk]
  • Re-refined 5eau structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5EAU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5EAU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 5EAU, from MSDmotif at EBI
  • Genome occurence of 5EAU's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d5eau_1, region 21-220 [Jmol] [rasmolscript] [script source]
        - Domain d5eau_2, region 221-548 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5eau_A] [5eau]
  • SWISS-PROT database: [Q40577]
  • Domain organization of [5EAS_TOBAC] by SWISSPFAM
  • Other resources with information on 5EAU
  • Community annotation for 5EAU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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