5EGU Transcription date Oct 27, 2015
title First Domain Of Human Bromodomain Brd4 In Complex With Inhib Butyl-8-(6-Butyl-5,7-Dimethyl-[1,2,4]Triazolo[1,5-A]Pyrimid Ylsulfanylmethyl)-7-Ethyl-3,7-Dihydropurine-2,6-Dione
authors B.Raux, E.Rebuffet, S.Betzi, S.Priet, X.Morelli
compound source
Molecule: Bromodomain-Containing Protein 4
Chain: A, B, C, D
Fragment: N-Terminal Bromodomain, Residues 42-168
Synonym: Protein Hunk1
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Brd4, Hunk1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Star
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pdest17
symmetry Space Group: P 21 21 21
R_factor 0.185 R_Free 0.235
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.686 83.612 107.391 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.21 Å
ligand 5NQ, EDO enzyme
Primary referenceExploring Selective Inhibition of the First Bromodomain of the Human Bromodomain and Extra-terminal Domain (BET) Proteins., Raux B, Voitovich Y, Derviaux C, Lugari A, Rebuffet E, Milhas S, Priet S, Roux T, Trinquet E, Guillemot JC, Knapp S, Brunel JM, Fedorov AY, Collette Y, Roche P, Betzi S, Combes S, Morelli X, J Med Chem. 2016 Jan 6. PMID:26735842
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (91 Kb) [Save to disk]
  • Biological Unit Coordinates (5egu.pdb1.gz) 23 Kb
  • Biological Unit Coordinates (5egu.pdb2.gz) 23 Kb
  • Biological Unit Coordinates (5egu.pdb3.gz) 21 Kb
  • Biological Unit Coordinates (5egu.pdb4.gz) 24 Kb
  • LPC: Ligand-Protein Contacts for 5EGU
  • CSU: Contacts of Structural Units for 5EGU
  • Structure Factors (276 Kb)
  • Retrieve 5EGU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5EGU from S2C, [Save to disk]
  • Re-refined 5egu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5EGU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5EGU
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5egu_C] [5egu] [5egu_A] [5egu_B] [5egu_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5EGU: [BROMO ] by SMART
    • Other resources with information on 5EGU
  • Community annotation for 5EGU at PDBWiki (http://pdbwiki.org)

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