5EHJ	Transcription	date	Oct 28, 2015
title	Crystal Structure Of The Er-Alpha Ligand-Binding Domain In C With The Cyclofenil Derivative 4,4'-[(4ar,8ar)-Octahydronap 2(1h)-Ylidenemethanediyl]Diphenol
authors	J.C.Nwachukwu, S.Srinivasan, Y.Zheng, S.Wang, J.Min, C.Dong, Z.Lia V.Cavett, J.Nowak, R.Houtman, K.E.Carlson, J.S.Josan, O.Elemento J.A.Katzenellenbogen, H.B.Zhou, K.W.Nettles
compound		source
Molecule: Estrogen Receptor Chain: A, B Synonym: Er,Er-Alpha,Estradiol Receptor,Nuclear Receptor Su Group A Member 1; Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Esr1, Esr, Nr3a1 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid
Molecule: Ncoa2 Chain: C, D Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: P 1 21 1	R_factor 0.209 R_Free 0.254
crystal cell	length a length b length c angle alpha angle beta angle gamma 55.000 81.990 58.320 90.00 110.45 90.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand	5K5	enzyme
Primary reference	Predictive features of ligand-specific signaling through the estrogen receptor., Nwachukwu JC, Srinivasan S, Zheng Y, Wang S, Min J, Dong C, Liao Z, Nowak J, Wright NJ, Houtman R, Carlson KE, Josan JS, Elemento O, Katzenellenbogen JA, Zhou HB, Nettles KW, Mol Syst Biol. 2016 Apr 22;12(4):864. doi: 10.15252/msb.20156701. PMID:27107013

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (163 Kb) [Save to disk] Biological Unit Coordinates (5ehj.pdb1.gz) 155 Kb LPC: Ligand-Protein Contacts for 5EHJ CSU: Contacts of Structural Units for 5EHJ Structure Factors (206 Kb) Retrieve 5EHJ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5EHJ from S2C, [Save to disk] Re-refined 5ehj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5EHJ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5EHJ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5ehj_B] [5ehj_A] [5ehj_C] [5ehj] [5ehj_D] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5EHJ: [HOLI ] by SMART

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