5EKQ	Membrane Protein	date	Nov 04, 2015
title	The Structure Of The Bamacde Subcomplex From E. Coli
authors	J.Bakelar, S.K.Buchanan, N.Noinaj
compound		source
Molecule: Outer Membrane Protein Assembly Factor Bama Chain: A Fragment: Unp Residues 21-810 Synonym: Omp85 Engineered: Yes		Organism_scientific: Escherichia Coli (Strain K12) Organism_taxid: 83333 Strain: K12 Gene: Bama, Yaet, Yzzn, Yzzy, B0177, Jw0172 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)
Molecule: Outer Membrane Protein Assembly Factor Bamd Chain: D Fragment: Unp Residues 20-245 Engineered: Yes		Organism_scientific: Escherichia Coli (Strain K12) Organism_taxid: 83333 Strain: K12 Gene: Bamd, Yfio, B2595, Jw2577 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)
Molecule: Outer Membrane Protein Assembly Factor Bamc Chain: C Fragment: Unp Residues 25-344 Engineered: Yes		Organism_scientific: Escherichia Coli (Strain K12) Organism_taxid: 83333 Strain: K12 Gene: Bamc, Dapx, Nlpb, B2477, Jw2462 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)
Molecule: Outer Membrane Protein Assembly Factor Bame Chain: E Fragment: Unp Residues 20-113 Engineered: Yes		Organism_scientific: Escherichia Coli (Strain K12) Organism_taxid: 83333 Strain: K12 Gene: Bame, Smpa, B2617, Jw2598 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)
symmetry	Space Group: C 1 2 1	R_factor 0.238 R_Free 0.281
crystal cell	length a length b length c angle alpha angle beta angle gamma 234.848 109.231 103.988 90.00 95.04 90.00
method	X-Ray Diffraction	resolution	3.39 Å
Gene Ontology	Chain Function Process Component A C D E
Primary reference	The structure of the beta-barrel assembly machinery complex., Bakelar J, Buchanan SK, Noinaj N, Science. 2016 Jan 8;351(6269):180-6. doi: 10.1126/science.aad3460. PMID:26744406

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (198 Kb) [Save to disk] Biological Unit Coordinates (5ekq.pdb1.gz) 191 Kb CSU: Contacts of Structural Units for 5EKQ Structure Factors (240 Kb) Retrieve 5EKQ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5EKQ from S2C, [Save to disk] Re-refined 5ekq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5EKQ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5EKQ

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5ekq_C] [5ekq] [5ekq_A] [5ekq_E] [5ekq_D] SWISS-PROT database: Domain organization of by SWISSPFAM

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