5EQ1 Dna Binding Protein date Nov 12, 2015
title Crystal Structure Of The Human Brpf1 Bromodomain In Complex Seed12
authors J.Zhu, A.Caflisch
compound source
Molecule: Peregrin
Chain: A
Fragment: Unp Residues 626-740
Synonym: Bromodomain And Phd Finger-Containing Protein 1,Pr Br140;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Brpf1, Br140
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 32 2 1
R_factor 0.189 R_Free 0.194
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.380 60.380 63.200 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.55 Å
ligand BEA, NO3 enzyme
Primary referenceTwenty Crystal Structures of Bromodomain and PHD Finger Containing Protein 1 (BRPF1)/Ligand Complexes Reveal Conserved Binding Motifs and Rare Interactions., Zhu J, Caflisch A, J Med Chem. 2016 May 24. PMID:27167503
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk]
  • Biological Unit Coordinates (5eq1.pdb1.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 5EQ1
  • CSU: Contacts of Structural Units for 5EQ1
  • Structure Factors (185 Kb)
  • Retrieve 5EQ1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5EQ1 from S2C, [Save to disk]
  • Re-refined 5eq1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5EQ1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5EQ1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5eq1] [5eq1_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5EQ1: [BROMO ] by SMART
    • Other resources with information on 5EQ1
  • Community annotation for 5EQ1 at PDBWiki (http://pdbwiki.org)

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