5EUQ	Transferase Signaling Protein	date	Nov 19, 2015
title	Crystal Structure Of An Engineered Construct Of Phosphatidyl Kinase III Beta With A Potent And Selective Inhibitor In Co Gdp Loaded Rab11
authors	J.E.Burke, M.L.Fowler
compound		source
Molecule: Ras-Related Protein Rab-11a Chain: B Synonym: Rab-11,Yl8 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Rab11a, Rab11 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Poptg
Molecule: Phosphatidylinositol 4-Kinase Beta Chain: E Synonym: Ptdins 4-Kinase Beta,Npik,Pi4k92 Ec: 2.7.1.67 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pi4kb Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Popth
symmetry	Space Group: P 21 21 21	R_factor 0.233 R_Free 0.266
crystal cell	length a length b length c angle alpha angle beta angle gamma 48.900 103.490 188.940 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.20 Å
ligand	5S8, GDP, SO4	enzyme	Transferase E.C.2.7.1.67 BRENDA
Gene Ontology	Chain Function Process Component B E
Primary reference	Design and structural characterization of potent and selective inhibitors of phosphatidylinositol 4 kinase IIIbeta., Rutaganira FU, Fowler ML, McPhail JA, Gelman MA, Nguyen K, Xiong A, Dornan GL, Tavshanjian B, Glenn JS, Shokat KM, Burke JE, J Med Chem. 2016 Feb 17. PMID:26885694

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (220 Kb) [Save to disk] Biological Unit Coordinates (5euq.pdb1.gz) 212 Kb LPC: Ligand-Protein Contacts for 5EUQ CSU: Contacts of Structural Units for 5EUQ Structure Factors (982 Kb) Retrieve 5EUQ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5EUQ from S2C, [Save to disk] Re-refined 5euq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5EUQ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5EUQ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5euq] [5euq_B] [5euq_E] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 5EUQ: [PI3Kc] [RAB ] by SMART

Other resources with information on 5EUQ

Community annotation for 5EUQ at PDBWiki (http://pdbwiki.org)

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