5EZH Transcription date Nov 26, 2015
title Structure Of Transcriptional Regulatory Repressor Protein - Mycobacterium Tuberculosis In Complex With Compound 21 At 1 Resolution
authors S.Surade, M.Blaszczyk, P.O.Nikiforov, C.Abell, T.L.Blundell
compound source
Molecule: Hth-Type Transcriptional Regulator Ethr
Chain: A
Engineered: Yes
 Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 83331
Gene: Ethr, Etar, Mt3970
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 41 21 2
R_factor 0.194 R_Free 0.232
crystal
cell
length a length b length c angle alpha angle beta angle gamma
121.410 121.410 33.890 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand 841, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA fragment merging approach towards the development of small molecule inhibitors of Mycobacterium tuberculosis EthR for use as ethionamide boosters., Nikiforov PO, Surade S, Blaszczyk M, Delorme V, Brodin P, Baulard AR, Blundell TL, Abell C, Org Biomol Chem. 2016 Jan 25. PMID:26806381
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (38 Kb) [Save to disk]
  • Biological Unit Coordinates (5ezh.pdb1.gz) 63 Kb
  • LPC: Ligand-Protein Contacts for 5EZH
  • CSU: Contacts of Structural Units for 5EZH
  • Structure Factors (1802 Kb)
  • Retrieve 5EZH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5EZH from S2C, [Save to disk]
  • Re-refined 5ezh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5EZH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5EZH
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ezh_A] [5ezh]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5EZH
  • Community annotation for 5EZH at PDBWiki (http://pdbwiki.org)

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