5F70 Immune System date Dec 07, 2015
title Crystal Structures Of Human Tim Members
authors G.F.Gao, G.Lu, H.Wang, J.Qi
compound source
Molecule: Hepatitis A Virus Cellular Receptor 1
Chain: A
Fragment: Unp Residues 21-123
Synonym: Havcr-1, T-Cell Immunoglobulin And Mucin Domain-Co Protein 1, Timd-1;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Timd1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.197 R_Free 0.259
crystal
cell
length a length b length c angle alpha angle beta angle gamma
27.787 33.773 86.875 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (39 Kb) [Save to disk]
  • Biological Unit Coordinates (5f70.pdb1.gz) 35 Kb
  • CSU: Contacts of Structural Units for 5F70
  • Structure Factors (139 Kb)
  • Retrieve 5F70 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5F70 from S2C, [Save to disk]
  • Re-refined 5f70 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5F70 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5F70
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5f70_A] [5f70]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5F70: [IG ] by SMART
    • Other resources with information on 5F70
  • Community annotation for 5F70 at PDBWiki (http://pdbwiki.org)

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