5FBN	Transferase	date	Dec 14, 2015
title	Btk Kinase Domain With Inhibitor 1
authors	H.C.A.Raaijmakers, D.Vu-Pham
compound		source
Molecule: Tyrosine-Protein Kinase Btk Chain: C, D Fragment: Unp Residues 389-659 Synonym: Agammaglobulinemia Tyrosine Kinase,Atk,B-Cell Prog Kinase,Bpk,Bruton Tyrosine Kinase; Ec: 2.7.10.2 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Btk, Agmx1, Atk, Bpk Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_cell_line: Sf21 Expression_system_vector_type: Baculovirus
symmetry	Space Group: P 1 21 1	R_factor 0.179 R_Free 0.226
crystal cell	length a length b length c angle alpha angle beta angle gamma 38.262 71.475 103.056 90.00 90.68 90.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	5WE, 5WF, CL, EDO	enzyme	Transferase E.C.2.7.10.2 BRENDA
Gene Ontology	Chain Function Process Component D, C
Primary reference	Discovery of 8-Amino-imidazo[1,5-a]pyrazines as Reversible BTK Inhibitors for the Treatment of Rheumatoid Arthritis., Liu J, Guiadeen D, Krikorian A, Gao X, Wang J, Boga SB, Alhassan AB, Yu Y, Vaccaro H, Liu S, Yang C, Wu H, Cooper A, de Man J, Kaptein A, Maloney K, Hornak V, Gao YD, Fischmann TO, Raaijmakers H, Vu-Pham D, Presland J, Mansueto M, Xu Z, Leccese E, Zhang-Hoover J, Knemeyer I, Garlisi CG, Bays N, Stivers P, Brandish PE, Hicks A, Kim R, Kozlowski JA, ACS Med Chem Lett. 2015 Dec 19;7(2):198-203. doi: 10.1021/acsmedchemlett.5b00463., eCollection 2016 Feb 11. PMID:26985298

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (199 Kb) [Save to disk] Biological Unit Coordinates (5fbn.pdb1.gz) 95 Kb Biological Unit Coordinates (5fbn.pdb2.gz) 99 Kb LPC: Ligand-Protein Contacts for 5FBN CSU: Contacts of Structural Units for 5FBN Structure Factors (1073 Kb) Retrieve 5FBN in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5FBN from S2C, [Save to disk] Re-refined 5fbn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5FBN in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5FBN

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5fbn] [5fbn_D] [5fbn_C] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5FBN: [TyrKc ] by SMART

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