5FBQ Transferase date Dec 14, 2015
title Pi4kb In Complex With Rab11 And The Mi358 Inhibitor
authors D.Chalupska, I.Mejdrova, R.Nencka, E.Boura
compound source
Molecule: Phosphatidylinositol 4-Kinase Beta,Phosphatidylin Kinase Beta;
Chain: A
Fragment: Unp Residues 128-422, 523-799
Synonym: Ptdins 4-Kinase Beta,Npik,Pi4k92,Pi4kb,Ptdins 4-Ki Npik,Pi4k92,Pi4kb;
Ec: 2.7.1.67,2.7.1.67
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pi4kb, Pik4cb
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Ras-Related Protein Rab-11a
Chain: B
Synonym: Rab-11,Yl8
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rab11a, Rab11
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.248 R_Free 0.302
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.759 101.155 188.486 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.79 Å
ligand 5W6, GDP enzyme Transferase E.C.2.7.1.67 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (108 Kb) [Save to disk]
  • Biological Unit Coordinates (5fbq.pdb1.gz) 102 Kb
  • LPC: Ligand-Protein Contacts for 5FBQ
  • CSU: Contacts of Structural Units for 5FBQ
  • Structure Factors (88 Kb)
  • Retrieve 5FBQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5FBQ from S2C, [Save to disk]
  • Re-refined 5fbq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5FBQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5FBQ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5fbq_B] [5fbq] [5fbq_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5FBQ
  • Community annotation for 5FBQ at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science