5FD1 Electron Transport(Iron-Sulfur) date Jun 29, 1993
title Crystal Structures Of Oxidized And Reduced Azotobacter Vinel Ferredoxin At Ph 8 And Ph 6
authors C.D.Stout
compound source
Molecule: Ferredoxin
Chain: A
Engineered: Yes
 Organism_scientific: Azotobacter Vinelandii
Organism_taxid: 354
symmetry Space Group: P 41 21 2
R_factor 0.215 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.200 55.200 95.200 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand F3S, SF4 enzyme
note 5FD1 supersedes 4FD1, 3FD1, 2FD1, 1FD1
related structures by homologous chain: 1FDD, 2FD2
Gene
Ontology
ChainFunctionProcessComponent
A
  • electron transfer activity


    • Primary referenceCrystal structures of oxidized and reduced Azotobacter vinelandii ferredoxin at pH 8 and 6., Stout CD, J Biol Chem 1993 Dec 5;268(34):25920-7. PMID:8245025
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (23 Kb) [Save to disk]
  • Biological Unit Coordinates (5fd1.pdb1.gz) 19 Kb
  • LPC: Ligand-Protein Contacts for 5FD1
  • CSU: Contacts of Structural Units for 5FD1
  • Likely Quarternary Molecular Structure file(s) for 5FD1
  • Retrieve 5FD1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5FD1 from S2C, [Save to disk]
    • View 5FD1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5FD1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 5FD1, from MSDmotif at EBI
  • Genome occurence of 5FD1's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d5fd1__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5fd1_A] [5fd1]
  • SWISS-PROT database: [P00214]
  • Domain organization of [FER1_AZOVI] by SWISSPFAM
    • Other resources with information on 5FD1
  • Community annotation for 5FD1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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