5FI7 Hydrolase Hydrolase Inhibitor date Dec 22, 2015
title Crystal Structure Of Human Gac In Complex With Inhibitor Upg 2-Phenyl-~{N}-[5-[(3~{S})-3-[[5-(2-Phenylethanoylamino)-1,3 Thiadiazol-2-Yl]Oxy]Pyrrolidin-1-Yl]-1,3,4-Thiadiazol-2-Yl]
authors Q.Huang, R.Cerione
compound source
Molecule: Glutaminase Kidney Isoform, Mitochondrial
Chain: A, B, C, D
Synonym: Gls,K-Glutaminase,L-Glutamine Amidohydrolase
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.218 R_Free 0.267
crystal
cell
length a length b length c angle alpha angle beta angle gamma
99.174 138.829 176.653 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand 5XZ enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceDesign and evaluation of novel glutaminase inhibitors., McDermott LA, Iyer P, Vernetti L, Rimer S, Sun J, Boby M, Yang T, Fioravanti M, O'Neill J, Wang L, Drakes D, Katt W, Huang Q, Cerione R, Bioorg Med Chem. 2016 Apr 15;24(8):1819-39. doi: 10.1016/j.bmc.2016.03.009. Epub , 2016 Mar 7. PMID:26988803
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (530 Kb) [Save to disk]
  • Biological Unit Coordinates (5fi7.pdb1.gz) 521 Kb
  • Biological Unit Coordinates (5fi7.pdb2.gz) 522 Kb
  • LPC: Ligand-Protein Contacts for 5FI7
  • CSU: Contacts of Structural Units for 5FI7
  • Structure Factors (639 Kb)
  • Retrieve 5FI7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5FI7 from S2C, [Save to disk]
  • Re-refined 5fi7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5FI7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5FI7
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5fi7_D] [5fi7_B] [5fi7] [5fi7_A] [5fi7_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5FI7
  • Community annotation for 5FI7 at PDBWiki (http://pdbwiki.org)

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