5FIH Transferase date Sep 25, 2015
title Saccharomyces Cerevisiae Gas2p (E176q Mutant) In Complex Wit Laminaritetraose And Laminaripentaose
authors L.Raich, V.Borodkin, D.M.F.Van Aalten, R.Hurtado-Guerrero, C.Rov
compound source
Molecule: 1,3-Beta-Glucanosyltransferase
Chain: A
Ec: 2.4.1.-
Engineered: Yes
Mutation: Yes
 Organism_scientific: Saccharomyces Cerevisiae
Organism_taxid: 4932
Expression_system: Pichia Pastoris
Expression_system_taxid: 4922
Expression_system_strain: X33
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ppiczalphaa
symmetry Space Group: P 21 21 21
R_factor 0.217 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.115 70.258 149.916 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand BGC, GLC enzyme Transferase E.C.2.4.1 BRENDA
Primary referenceA Trapped Covalent Intermediate of a Glycoside Hydrolase on the Pathway to Transglycosylation. Insights from Experiments and Quantum Mechanics/Molecular Mechanics Simulations., Raich L, Borodkin V, Fang W, Castro-Lopez J, van Aalten DM, Hurtado-Guerrero R, Rovira C, J Am Chem Soc. 2016 Mar 1. PMID:26859322
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (83 Kb) [Save to disk]
  • Biological Unit Coordinates (5fih.pdb1.gz) 76 Kb
  • LPC: Ligand-Protein Contacts for 5FIH
  • CSU: Contacts of Structural Units for 5FIH
  • Structure Factors (826 Kb)
  • Retrieve 5FIH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5FIH from S2C, [Save to disk]
  • Re-refined 5fih structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5FIH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5FIH
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5fih] [5fih_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5FIH: [X8 ] by SMART
    • Other resources with information on 5FIH
  • Community annotation for 5FIH at PDBWiki (http://pdbwiki.org)

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