5FJK Oxidoreductase date Oct 09, 2015
title Crystal Structure Of Human Jmjd2c Catalytic Domain In Comple 5-Methyl-7-Oxo-4,7-Dihydropyrazolo(1,5-A)Pyrimidine-3-Carbo
authors V.Cecatiello, S.Pasqualato
compound source
Molecule: Lysine-Specific Demethylase 4c
Chain: A
Fragment: Catalytic Domain, Residues 3-347
Synonym: Jmjd2c, Gene Amplified In Squamous Cell Carcinoma Gasc-1 Protein, Jmjc Domain-Containing Histone Demethylatio 3c, Jumonji Domain-Containing Protein 2c;
Ec: 1.14.11.-
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petm14
symmetry Space Group: C 2 2 21
R_factor 0.159 R_Free 0.197
crystal
cell
length a length b length c angle alpha angle beta angle gamma
89.900 91.270 98.990 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.66 Å
ligand CL, EDO, EM6, NI, ZN enzyme Oxidoreductase E.C.1.14.11 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (125 Kb) [Save to disk]
  • Biological Unit Coordinates (5fjk.pdb1.gz) 119 Kb
  • LPC: Ligand-Protein Contacts for 5FJK
  • CSU: Contacts of Structural Units for 5FJK
  • Structure Factors (878 Kb)
  • Retrieve 5FJK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5FJK from S2C, [Save to disk]
  • Re-refined 5fjk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5FJK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5FJK
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5fjk_A] [5fjk]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5FJK: [JmjC] [JmjN ] by SMART
    • Other resources with information on 5FJK
  • Community annotation for 5FJK at PDBWiki (http://pdbwiki.org)

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