5FL7 Hydrolase date Oct 22, 2015
title Structure Of The F1c10 Complex From Yarrowia Lipolytica Atp
authors K.Parey, M.Bublitz, T.Meier
compound source
Molecule: Atp Synthase Subunit Alpha
Chain: A, B, C
Synonym: Atp Synthase Subunit Alpha, Mitochondrial
 Organism_scientific: Yarrowia Lipolytica
Organism_taxid: 4952

Molecule: Atp Synthase Subunit Beta
Chain: D, E, F
Synonym: Atp Synthase Subunit Beta, Mitochondrial
Ec: 3.6.3.14
Organism_scientific: Yarrowia Lipolytica
Organism_taxid: 4952

Molecule: Atp Synthase Subunit Gamma Chain, Mitochondrial
Chain: G
Ec: 3.6.1.34
Organism_scientific: Yarrowia Lipolytica
Organism_taxid: 4952

Molecule: Atp Synthase Delta Chain, Mitochondrial
Chain: H
Ec: 3.6.1.34
Organism_scientific: Yarrowia Lipolytica
Organism_taxid: 4952

Molecule: Atp Synthase Epsilon Chain, Mitochondrial
Chain: I
Ec: 3.6.1.34
Organism_scientific: Yarrowia Lipolytica
Organism_taxid: 4952

Molecule: Atp Synthase Subunit 9, Mitochondrial
Chain: K, L, M, N, O, P, Q, R, S, T
Synonym: Lipid-Binding Protein, Oligomycin Resistance Prote
Ec: 3.6.3.14
Organism_scientific: Yarrowia Lipolytica
Organism_taxid: 4952
symmetry Space Group: P 21 21 2
R_factor 0.274 R_Free 0.305
crystal
cell
length a length b length c angle alpha angle beta angle gamma
169.500 182.200 193.000 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.50 Å
ligand ADP, ATP, MG enzyme Hydrolase E.C.3.6.3.14 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
C, A, B


F, E, D


G


H


S, T, N, K, Q, M, L, O, P, R


Primary referenceStructure of a Complete ATP Synthase Dimer Reveals the Molecular Basis of Inner Mitochondrial Membrane Morphology., Hahn A, Parey K, Bublitz M, Mills DJ, Zickermann V, Vonck J, Kuhlbrandt W, Meier T, Mol Cell. 2016 Jun 29. pii: S1097-2765(16)30223-4. doi:, 10.1016/j.molcel.2016.05.037. PMID:27373333
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (609 Kb) [Save to disk]
  • Biological Unit Coordinates (5fl7.pdb1.gz) 601 Kb
  • LPC: Ligand-Protein Contacts for 5FL7
  • CSU: Contacts of Structural Units for 5FL7
  • Structure Factors (671 Kb)
  • Retrieve 5FL7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5FL7 from S2C, [Save to disk]
  • Re-refined 5fl7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5FL7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5FL7
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5fl7_K] [5fl7_A] [5fl7_I] [5fl7_Q] [5fl7_T] [5fl7_G] [5fl7_D] [5fl7_B] [5fl7_R] [5fl7_N] [5fl7_M] [5fl7_O] [5fl7_H] [5fl7_F] [5fl7_E] [5fl7_C] [5fl7_P] [5fl7_S] [5fl7_L] [5fl7]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5FL7: [AAA ] by SMART
    • Other resources with information on 5FL7
  • Community annotation for 5FL7 at PDBWiki (http://pdbwiki.org)

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