5FO2 Transport Protein date Nov 17, 2015
title Structure Of Human Transthyretin Mutant A108i
authors N.Varejao, R.Santanna, M.J.Saraiva, P.Gallego, S.Ventura, D.Rever
compound source
Molecule: Transthyretin
Chain: A, B
Fragment: Residues 21-147
Synonym: Attr, Prealbumin, Tbpa
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 2
R_factor 0.184 R_Free 0.215
crystal
cell
length a length b length c angle alpha angle beta angle gamma
85.255 43.586 64.919 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.45 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • hormone activity


    • Primary referenceCavity filling mutations at the thyroxine-binding site dramatically increase transthyretin stability and prevent its aggregation., Sant'Anna R, Almeida MR, Varejao N, Gallego P, Esperante S, Ferreira P, Pereira-Henriques A, Palhano FL, de Carvalho M, Foguel D, Reverter D, Saraiva MJ, Ventura S, Sci Rep. 2017 Mar 24;7:44709. doi: 10.1038/srep44709. PMID:28338000
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (86 Kb) [Save to disk]
  • Biological Unit Coordinates (5fo2.pdb1.gz) 161 Kb
  • CSU: Contacts of Structural Units for 5FO2
  • Structure Factors (2242 Kb)
  • Retrieve 5FO2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5FO2 from S2C, [Save to disk]
  • Re-refined 5fo2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5FO2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5FO2
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5fo2] [5fo2_B] [5fo2_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5FO2: [TR_THY ] by SMART
    • Other resources with information on 5FO2
  • Community annotation for 5FO2 at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science