5FPT	Hydrolase	date	Dec 02, 2015
title	Structure Of Hepatitis C Virus (Hcv) Full-Length Ns3 Complex Small-Molecule Ligand 2-(1-Methyl-1h-Indol-3-Yl)Acetic Acid In An Alternate Binding Site.
authors	H.Jhoti, R.F.Ludlow, H.K.Saini, I.J.Tickle, M.Verdonk, P.Pathuri, P.A.Williams
compound		source
Molecule: Hepatitis C Virus Full-Length Ns3 Complex Chain: A, B Ec: 3.4.21.- Engineered: Yes		Organism_scientific: Hepatitis C Virus (Isolate Bk) Organism_taxid: 11105 Strain: Genotype 1b Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet17
symmetry	Space Group: P 21 21 21	R_factor 0.155 R_Free 0.251
crystal cell	length a length b length c angle alpha angle beta angle gamma 91.602 110.621 140.780 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.72 Å
ligand	3VY	enzyme	Hydrolase E.C.3.4.21 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Detection of secondary binding sites in proteins using fragment screening., Ludlow RF, Verdonk ML, Saini HK, Tickle IJ, Jhoti H, Proc Natl Acad Sci U S A. 2015 Dec 11. pii: 201518946. PMID:26655740

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (393 Kb) [Save to disk] Biological Unit Coordinates (5fpt.pdb1.gz) 386 Kb LPC: Ligand-Protein Contacts for 5FPT CSU: Contacts of Structural Units for 5FPT Structure Factors (728 Kb) Retrieve 5FPT in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5FPT from S2C, [Save to disk] Re-refined 5fpt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5FPT in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5FPT

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5fpt] [5fpt_A] [5fpt_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5FPT: [DEXDc ] by SMART

Other resources with information on 5FPT

Community annotation for 5FPT at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---