5FQA Hydrolase date Dec 08, 2015
title Crystal Structure Of Bacillus Cereus Metallo-Beta-Lactamase
authors S.T.Cahill, J.Brem, M.A.Mcdonough, C.J.Schofield
compound source
Molecule: Beta-Lactamase 2
Chain: A
Fragment: Unp Residues 31-257
Synonym: Beta-Lactamase II, Cephalosporinase, Penicillinase Beta-Lactamase II;
Ec: 3.5.2.6
Engineered: Yes
Organism_scientific: Bacillus Cereus
Organism_taxid: 1396
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Plyss
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet9a
symmetry Space Group: C 1 2 1
R_factor 0.119 R_Free 0.140
crystal
cell
length a length b length c angle alpha angle beta angle gamma
53.048 61.500 69.469 90.00 92.98 90.00
method X-Ray Diffractionresolution 1.10 Å
ligand CSD, EDO, FE, GOL, OH, SO4 enzyme Hydrolase E.C.3.5.2.6 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceUse of ferrous iron by metallo-beta-lactamases., Cahill ST, Tarhonskaya H, Rydzik AM, Flashman E, McDonough MA, Schofield CJ, Brem J, J Inorg Biochem. 2016 Jul 26. pii: S0162-0134(16)30214-8. doi:, 10.1016/j.jinorgbio.2016.07.013. PMID:27498591
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (95 Kb) [Save to disk]
  • Biological Unit Coordinates (5fqa.pdb1.gz) 89 Kb
  • LPC: Ligand-Protein Contacts for 5FQA
  • CSU: Contacts of Structural Units for 5FQA
  • Structure Factors (981 Kb)
  • Retrieve 5FQA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5FQA from S2C, [Save to disk]
  • Re-refined 5fqa structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5FQA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5FQA
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5fqa_A] [5fqa]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5FQA: [Lactamase_B ] by SMART
  • Other resources with information on 5FQA
  • Community annotation for 5FQA at PDBWiki (http://pdbwiki.org)

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