5FQT Signaling Protein date Dec 14, 2015
title Selective Estrogen Receptor Downregulator Antagonists: Tetrahydroisoquinoline Phenols 4.
authors J.S.Scott, A.Bailey, R.D.M.Davies, S.L.Degorce, P.A.Macfaul, H.Gi T.Moss, R.A.Norman, J.H.Pink, A.A.Rabow, B.Roberts, P.D.Smith
compound source
Molecule: Estrogen Receptor Alpha
Chain: A
Fragment: Ligand-Binding Domain, Unp Residues 307-554
Synonym: Er, Er-Alpha, Estradiol Receptor, Nuclear Receptor Group A Member 1, Estrogen Receptor Alpha;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Gold
symmetry Space Group: P 65 2 2
R_factor 0.193 R_Free 0.232
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.323 58.323 276.354 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.99 Å
ligand 7QN enzyme
Primary referenceTetrahydroisoquinoline Phenols: Selective Estrogen Receptor Downregulator Antagonists with Oral Bioavailability in Rat., Scott JS, Bailey A, Davies RD, Degorce SL, MacFaul PA, Gingell H, Moss T, Norman RA, Pink JH, Rabow AA, Roberts B, Smith PD, ACS Med Chem Lett. 2015 Dec 19;7(1):94-9. doi: 10.1021/acsmedchemlett.5b00413., eCollection 2016 Jan 14. PMID:26819673
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (83 Kb) [Save to disk]
  • Biological Unit Coordinates (5fqt.pdb1.gz) 154 Kb
  • LPC: Ligand-Protein Contacts for 5FQT
  • CSU: Contacts of Structural Units for 5FQT
  • Structure Factors (378 Kb)
  • Retrieve 5FQT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5FQT from S2C, [Save to disk]
  • Re-refined 5fqt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5FQT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5FQT
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5fqt_A] [5fqt]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5FQT: [HOLI ] by SMART
  • Other resources with information on 5FQT
  • Community annotation for 5FQT at PDBWiki (http://pdbwiki.org)

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