5FUI Hydrolase date Jan 27, 2016
title Crystal Structure Of The C-Terminal Cbm6 Of Lamc A Marine La From Zobellia Galactanivorans
authors A.Labourel, M.Jam, L.Legentil, B.Sylla, J.H.Hehemann, E.Ficko-Ble V.Ferrieres, M.Czjzek, G.Michel
compound source
Molecule: Endo-1,3-Beta-Glucanase, Family Gh16
Chain: A
Fragment: Carbohydrate Binding Module, Residues 262-385
Engineered: Yes
 Organism_scientific: Zobellia Galactanivorans
Organism_taxid: 63186
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_vector: Pfo4
Other_details: German Collection Of Microorganisms (Dsm)
symmetry Space Group: C 1 2 1
R_factor 0.126 R_Free 0.127
crystal
cell
length a length b length c angle alpha angle beta angle gamma
78.056 29.523 51.872 90.00 115.79 90.00
method X-Ray Diffractionresolution 1.40 Å
ligand APY, GOL, MG enzyme
note 5FUI supersedes 4CRR
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (5fui.pdb1.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 5FUI
  • CSU: Contacts of Structural Units for 5FUI
  • Structure Factors (1013 Kb)
  • Retrieve 5FUI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5FUI from S2C, [Save to disk]
  • Re-refined 5fui structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5FUI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5FUI
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5fui] [5fui_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5FUI: [CBD_IV ] by SMART
    • Other resources with information on 5FUI
  • Community annotation for 5FUI at PDBWiki (http://pdbwiki.org)

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