5G44 Dna Binding Protein date May 04, 2016
title Ligand Complex Of Rorg Lbd
authors Y.Xue, H.Guo, P.Hillertz
compound source
Molecule: Nuclear Receptor Ror-Gamma
Chain: A
Fragment: Ligand Binding Domain, Residues 265-507
Synonym: Nuclear Receptor Rzr-Gamma, Nuclear Receptor Subfa Group F Member 3, Rar-Related Orphan Receptor C, Retinoid- Orphan Receptor-Gamma;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Rorg
Chain: C
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 41 21 2
R_factor 0.1880 R_Free 0.2293
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.840 61.840 156.430 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.84 Å
ligand DMS, I6G, NA, SWX, YTZ enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceFragment Screening of RORgammat Using Cocktail Crystallography: Identification of Simultaneous Binding of Multiple Fragments., Xue Y, Guo H, Hillertz P, ChemMedChem. 2016 Jul 19. doi: 10.1002/cmdc.201600242. PMID:27432277
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (5g44.pdb1.gz) 47 Kb
  • LPC: Ligand-Protein Contacts for 5G44
  • CSU: Contacts of Structural Units for 5G44
  • Structure Factors (485 Kb)
  • Retrieve 5G44 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5G44 from S2C, [Save to disk]
  • Re-refined 5g44 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5G44 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5G44
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5g44_A] [5g44_C] [5g44]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5G44: [HOLI ] by SMART
  • Other resources with information on 5G44
  • Community annotation for 5G44 at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science