5GOC Protein Binding date Jul 26, 2016
title Lys11-Linked Diubiquitin
authors S.Gao, M.Pan, Y.Zheng
compound source
Molecule: Ubiquitin
Chain: A
Engineered: Yes
 Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: D-Ubiquitin
Chain: D
Engineered: Yes
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1
R_factor 0.187 R_Free 0.236
crystal
cell
length a length b length c angle alpha angle beta angle gamma
26.523 26.733 43.768 75.17 76.00 80.96
method X-Ray Diffractionresolution 1.73 Å
ligand DAL, DAR, DAS, DGL, DGN, DHI, DIL, DLE, DLY, DNE, DPN, DPR, DSG, DSN, DTH, DTY, DVA, NA enzyme
Primary referenceMonomer/Oligomer Quasi-Racemic Protein Crystallography., Gao S, Pan M, Zheng Y, Huang Y, Zheng Q, Sun D, Lu L, Tan X, Tan X, Lan H, Wang J, Wang T, Wang J, Liu L, J Am Chem Soc. 2016 Oct 21. PMID:27768314
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (36 Kb) [Save to disk]
  • Biological Unit Coordinates (5goc.pdb1.gz) 28 Kb
  • Biological Unit Coordinates (5goc.pdb2.gz) 15 Kb
  • LPC: Ligand-Protein Contacts for 5GOC
  • CSU: Contacts of Structural Units for 5GOC
  • Structure Factors (195 Kb)
  • Retrieve 5GOC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5GOC from S2C, [Save to disk]
  • Re-refined 5goc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5GOC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5GOC
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5goc_D] [5goc_A] [5goc]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5GOC: [UBQ ] by SMART
    • Other resources with information on 5GOC
  • Community annotation for 5GOC at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science