5H1V	Transcription Transcription Inhibitor	date	Oct 11, 2016
title	Complex Structure Of Trim24 Phd-Bromodomain And Inhibitor 6
authors	J.Liu
compound		source
Molecule: Transcription Intermediary Factor 1-Alpha Chain: A, B Fragment: Unp Residues 824-1006 Synonym: Tif1-Alpha,E3 Ubiquitin-Protein Ligase Trim24,Ring Protein 82,Tripartite Motif-Containing Protein 24; Ec: 6.3.2.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Trim24, Rnf82, Tif1, Tif1a Expression_system: Escherichia Coli 'Bl21-Gold(De3)Plyss Ag Expression_system_taxid: 866768 Expression_system_strain: 'Bl21-Gold(De3)Plyss Ag'
symmetry	Space Group: P 1 21 1	R_factor 0.180 R_Free 0.220
crystal cell	length a length b length c angle alpha angle beta angle gamma 50.028 36.027 113.207 90.00 96.88 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	7FU, DMS, ZN	enzyme	Ligase E.C.6.3.2 BRENDA
Primary reference	The Polar Warhead of a TRIM24 Bromodomain Inhibitor Rearranges a Water-Mediated Interaction Network., Liu J, Li F, Bao H, Jiang Y, Zhang S, Ma R, Gao J, Wu J, Ruan K, FEBS J. 2017 Feb 16. doi: 10.1111/febs.14041. PMID:28207202

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (123 Kb) [Save to disk] Biological Unit Coordinates (5h1v.pdb1.gz) 60 Kb Biological Unit Coordinates (5h1v.pdb2.gz) 60 Kb LPC: Ligand-Protein Contacts for 5H1V CSU: Contacts of Structural Units for 5H1V Structure Factors (451 Kb) Retrieve 5H1V in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5H1V from S2C, [Save to disk] Re-refined 5h1v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5H1V in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5H1V

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5h1v_B] [5h1v_A] [5h1v] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5H1V

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