5H37 Virus Immune System date Oct 20, 2016
title Cryo-Em Structure Of Zika Virus Complexed With Fab C10 At Ph
authors S.Zhang, V.Kostyuchenko, T.S.Ng, X.N.Lim, J.S.G.Ooi, S.Lambert, D.Widman, J.Shi, R.S.Baric, S.M.Lok
compound source
Molecule: Structural Protein E
Chain: A, C, B
Organism_scientific: Zika Virus
Organism_common: Zikv
Organism_taxid: 64320
Strain: Mr 766

Molecule: Strutural Protein M
Chain: D, E, F

Organism_scientific: Zika Virus
Organism_common: Zikv
Organism_taxid: 64320
Strain: Mr 766

Molecule: C10 Igg Heavy Chain Variable Region
Chain: G, K, I
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293t

Molecule: C10 Igg Light Chain Variable Region
Chain: H, L, M
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293t
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.00 Å
ligand NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


F, D, E


Primary referenceNeutralization mechanism of a highly potent antibody against Zika virus., Zhang S, Kostyuchenko VA, Ng TS, Lim XN, Ooi JS, Lambert S, Tan TY, Widman DG, Shi J, Baric RS, Lok SM, Nat Commun. 2016 Nov 24;7:13679. doi: 10.1038/ncomms13679. PMID:27882950
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (359 Kb) [Save to disk]
  • Biological Unit Coordinates (5h37.pdb1.gz) 20589 Kb
  • LPC: Ligand-Protein Contacts for 5H37
  • CSU: Contacts of Structural Units for 5H37
  • Retrieve 5H37 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5H37 from S2C, [Save to disk]
  • View 5H37 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5H37
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5h37_D] [5h37_I] [5h37_F] [5h37_G] [5h37_K] [5h37_E] [5h37] [5h37_L] [5h37_M] [5h37_C] [5h37_A] [5h37_B] [5h37_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5H37: [IGv ] by SMART
  • Other resources with information on 5H37
  • Community annotation for 5H37 at PDBWiki (http://pdbwiki.org)

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