5HEN Transcription date Jan 06, 2016
title Crystal Structure Of The N-Terminus R100l Bromodomain Mutant Brd2
authors C.Tallant, C.Lori, A.Pasquo, R.Chiaraluce, V.Consalvi, J.A.Newman Delft, C.H.Arrowsmith, A.M.Edwards, C.Bountra, S.Knapp
compound source
Molecule: Bromodomain-Containing Protein 2
Chain: A, B, C
Synonym: O27.1.1,Really Interesting New Gene 3 Protein
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Brd2, Kiaa9001, Ring3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: C 1 2 1
R_factor 0.181 R_Free 0.223
crystal
cell
length a length b length c angle alpha angle beta angle gamma
115.381 55.757 68.451 90.00 94.76 90.00
method X-Ray Diffractionresolution 1.79 Å
ligand EDO enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (117 Kb) [Save to disk]
  • Biological Unit Coordinates (5hen.pdb1.gz) 38 Kb
  • Biological Unit Coordinates (5hen.pdb2.gz) 39 Kb
  • Biological Unit Coordinates (5hen.pdb3.gz) 38 Kb
  • LPC: Ligand-Protein Contacts for 5HEN
  • CSU: Contacts of Structural Units for 5HEN
  • Structure Factors (849 Kb)
  • Retrieve 5HEN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5HEN from S2C, [Save to disk]
  • Re-refined 5hen structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5HEN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5HEN
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5hen_C] [5hen_B] [5hen_A] [5hen]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5HEN: [BROMO ] by SMART
    • Other resources with information on 5HEN
  • Community annotation for 5HEN at PDBWiki (http://pdbwiki.org)

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