5HHI Transferase, Lyase Dna date Jan 11, 2016
title Structure Of Human Dna Polymerase Beta Host-Guest Complexed Platinated N7-G
authors S.Lee, M.C.Koag
compound source
Molecule: Dna Polymerase Beta
Chain: A
Ec: 2.7.7.7,4.2.99.-
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Polb
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (5'-D(Cpcpgpapcpgpgpapgpgpapgpcp 3');
Chain: T
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (5'-D(Pcpcptpgpcptpcpcptpc)-3')
Chain: P
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (5'-D(Pgptpcpgpg)-3')
Chain: D
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 1 21 1
R_factor 0.222 R_Free 0.279
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.372 80.119 54.674 90.00 108.94 90.00
method X-Ray Diffractionresolution 2.52 Å
ligand 61C, NA enzyme Transferase E.C.2.7.7.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSynthesis, structure, and biological evaluation of a platinum-carbazole conjugate., Cheun Y, Koag MC, Naguib YW, Ouzon-Shubeita H, Cui Z, Pakotiprapha D, Lee S, Chem Biol Drug Des. 2018 Jan;91(1):116-125. doi: 10.1111/cbdd.13062. Epub 2017, Jul 29. PMID:28649747
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk]
  • Biological Unit Coordinates (5hhi.pdb1.gz) 66 Kb
  • LPC: Ligand-Protein Contacts for 5HHI
  • CSU: Contacts of Structural Units for 5HHI
  • Structure Factors (166 Kb)
  • Retrieve 5HHI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5HHI from S2C, [Save to disk]
  • Re-refined 5hhi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5HHI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5HHI
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5hhi] [5hhi_D] [5hhi_A] [5hhi_T] [5hhi_P]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5HHI
  • Community annotation for 5HHI at PDBWiki (http://pdbwiki.org)

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