5HI9 Transport Protein date Jan 11, 2016
title Structure Of The Full-Length Trpv2 Channel By Cryo-Electron
authors K.W.Huynh, M.R.Cohen, J.Jiansen, A.Samanta, D.T.Lodowski, Z.H.Zho V.Y.Moiseenkova-Bell
compound source
Molecule: Transient Receptor Potential Cation Channel Subfa Member 2;
Chain: A, B, C, D
Synonym: Trpv2, Osm-9-Like Trp Channel 2, Otrpc2, Stretch-A Channel 2b, Vanilloid Receptor-Like Protein 1, Vrl-1;
Engineered: Yes
 Organism_scientific: Rattus Norvegicus
Organism_taxid: 10116
Expression_system: Saccharomycetales
Expression_system_taxid: 4892
Expression_system_strain: Bj5457
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.40 Å
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructure of the full-length TRPV2 channel by cryo-EM., Huynh KW, Cohen MR, Jiang J, Samanta A, Lodowski DT, Zhou ZH, Moiseenkova-Bell VY, Nat Commun. 2016 Mar 29;7:11130. doi: 10.1038/ncomms11130. PMID:27021073
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (364 Kb) [Save to disk]
  • Biological Unit Coordinates (5hi9.pdb1.gz) 357 Kb
  • CSU: Contacts of Structural Units for 5HI9
  • Retrieve 5HI9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5HI9 from S2C, [Save to disk]
    • View 5HI9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5HI9
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5hi9_C] [5hi9] [5hi9_D] [5hi9_A] [5hi9_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5HI9: [ANK ] by SMART
    • Other resources with information on 5HI9
  • Community annotation for 5HI9 at PDBWiki (http://pdbwiki.org)

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