5HLX Oxygen Storage date Jan 15, 2016
title X-Ray Crystal Structure Of Met F43hh64a Sperm Whale Myoglob Complex With Nitrite
authors H.Yuan
compound source
Molecule: Myoglobin
Chain: A
Fragment: Unp Residues 2-154
Engineered: Yes
Mutation: Yes
 Organism_scientific: Physeter Catodon
Organism_common: Sperm Whale
Organism_taxid: 9755
Gene: Mb
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.148 R_Free 0.173
crystal
cell
length a length b length c angle alpha angle beta angle gamma
39.701 49.545 77.588 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand HEM, NO2 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceRegulating the nitrite reductase activity of myoglobin by redesigning the heme active center., Wu LB, Yuan H, Gao SQ, You Y, Nie CM, Wen GB, Lin YW, Tan X, Nitric Oxide. 2016 Apr 22;57:21-29. doi: 10.1016/j.niox.2016.04.007. PMID:27108710
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (36 Kb) [Save to disk]
  • Biological Unit Coordinates (5hlx.pdb1.gz) 30 Kb
  • LPC: Ligand-Protein Contacts for 5HLX
  • CSU: Contacts of Structural Units for 5HLX
  • Structure Factors (528 Kb)
  • Retrieve 5HLX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5HLX from S2C, [Save to disk]
  • Re-refined 5hlx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5HLX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5HLX
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5hlx_A] [5hlx]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5HLX
  • Community annotation for 5HLX at PDBWiki (http://pdbwiki.org)

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