5HNL Hydrolase date Jan 18, 2016
title In-House X-Ray Single Crystal Diffraction From Protein Micro Via Magnetically Oriented Microcrystal Arrays In Gels
authors S.Tsukui, F.Kimura, K.Kusaka, S.Baba, N.Mizuno, T.Kimura
compound source
Molecule: Lysozyme C
Chain: A
Synonym: 1,4-Beta-N-Acetylmuramidase C,Allergen Gal D Iv
Ec: 3.2.1.17
 Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
symmetry Space Group: P 21 21 21
R_factor 0.171 R_Free 0.188
crystal
cell
length a length b length c angle alpha angle beta angle gamma
30.530 56.420 73.340 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.42 Å
ligand
enzyme Hydrolase E.C.3.2.1.17 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNeutron and X-ray single-crystal diffraction from protein microcrystals via magnetically oriented microcrystal arrays in gels., Tsukui S, Kimura F, Kusaka K, Baba S, Mizuno N, Kimura T, Acta Crystallogr D Struct Biol. 2016 Jul 1;72(Pt 7):823-9. doi:, 10.1107/S2059798316007415. Epub 2016 Jun 23. PMID:27377379
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (24 Kb) [Save to disk]
  • Biological Unit Coordinates (5hnl.pdb1.gz) 21 Kb
  • CSU: Contacts of Structural Units for 5HNL
  • Structure Factors (97 Kb)
  • Retrieve 5HNL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5HNL from S2C, [Save to disk]
  • Re-refined 5hnl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5HNL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5HNL
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5hnl_A] [5hnl]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5HNL: [LYZ1 ] by SMART
    • Other resources with information on 5HNL
  • Community annotation for 5HNL at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science