5HO8 Transferase date Jan 19, 2016
title Discovery Of Novel 7-Azaindoles As Pdk1 Inhibitors
authors M.Wucherer-Plietker, C.Esdar, T.Knoechel, P.Hillertz, T.Heinrich H.P.Buchstaller, H.Greiner, D.Dorsch, M.Calderini, D.Bruge, T.J.J.Mueller, U.Graedler
compound source
Molecule: 3-Phosphoinositide-Dependent Protein Kinase 1
Chain: A
Fragment: Kinase Domain, Residues 51-359
Synonym: Hpdk1
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pdpk1, Pdk1
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
symmetry Space Group: P 32 2 1
R_factor 0.182 R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
122.993 122.993 47.187 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.70 Å
ligand 63E, SEP, SO4 enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDiscovery of novel 7-azaindoles as PDK1 inhibitors., Wucherer-Plietker M, Merkul E, Muller TJ, Esdar C, Knochel T, Heinrich T, Buchstaller HP, Greiner H, Dorsch D, Finsinger D, Calderini M, Bruge D, Gradler U, Bioorg Med Chem Lett. 2016 Jul 1;26(13):3073-80. doi: 10.1016/j.bmcl.2016.05.005., Epub 2016 May 4. PMID:27217002
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (101 Kb) [Save to disk]
  • Biological Unit Coordinates (5ho8.pdb1.gz) 95 Kb
  • LPC: Ligand-Protein Contacts for 5HO8
  • CSU: Contacts of Structural Units for 5HO8
  • Structure Factors (131 Kb)
  • Retrieve 5HO8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5HO8 from S2C, [Save to disk]
  • Re-refined 5ho8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5HO8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5HO8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ho8_A] [5ho8]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5HO8: [S_TKc ] by SMART
  • Other resources with information on 5HO8
  • Community annotation for 5HO8 at PDBWiki (http://pdbwiki.org)

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