5HOX	De Novo Protein	date	Jan 19, 2016
title	X-Ray Crystallographic Structure Of An A-Beta 17_36 Beta-Hai Synchrotron Data Set. (Lvffaedcgsnkcaii(Sar)Lmv).
authors	A.G.Kreutzer, J.S.Nowick, R.K.Spencer
compound		source
Molecule: Amyloid Beta A4 Protein Chain: A, B, C, D, E, F Fragment: Unp Residues 687-707 Synonym: Abpp,Appi,App,Alzheimer Disease Amyloid Protein,Ce Vascular Amyloid Peptide,Cvap,Prea4,Protease Nexin-II,Pn-II Engineered: Yes Mutation: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: P 61 2 2	R_factor 0.220 R_Free 0.250
crystal cell	length a length b length c angle alpha angle beta angle gamma 97.369 97.369 97.591 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.90 Å
ligand	JEF, ORN, SAR	enzyme
Gene Ontology	Chain Function Process Component F, A, D, C, E, B
Primary reference	X-ray Crystallographic Structures of a Trimer, Dodecamer, and Annular Pore Formed by an Abeta17-36 beta-Hairpin., Kreutzer AG, Hamza IL, Spencer RK, Nowick JS, J Am Chem Soc. 2016 Apr 6;138(13):4634-42. doi: 10.1021/jacs.6b01332. Epub 2016, Mar 29. PMID:26967810

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (72 Kb) [Save to disk] Biological Unit Coordinates (5hox.pdb1.gz) 31 Kb Biological Unit Coordinates (5hox.pdb2.gz) 61 Kb Biological Unit Coordinates (5hox.pdb3.gz) 33 Kb Biological Unit Coordinates (5hox.pdb4.gz) 64 Kb Biological Unit Coordinates (5hox.pdb5.gz) 124 Kb LPC: Ligand-Protein Contacts for 5HOX CSU: Contacts of Structural Units for 5HOX Structure Factors (461 Kb) Retrieve 5HOX in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5HOX from S2C, [Save to disk] Re-refined 5hox structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5HOX in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5HOX

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5hox] [5hox_F] [5hox_D] [5hox_C] [5hox_A] [5hox_B] [5hox_E] SWISS-PROT database: Domain organization of by SWISSPFAM

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