5HOY De Novo Protein date Jan 19, 2016
title X-Ray Crystallographic Structure Of An A-Beta 17_36 Beta-Hai Ray Diffractometer Data Set. (Lvffaedcgsnkcaii(Sar)Lmv).
authors A.G.Kreutzer, R.K.Spencer, J.S.Nowick
compound source
Molecule: Amyloid Beta A4 Protein
Chain: A, B, C, D, E, F
Fragment: Unp Residues 687-707
Synonym: Abpp,Appi,App,Alzheimer Disease Amyloid Protein,Ce Vascular Amyloid Peptide,Cvap,Prea4,Protease Nexin-II,Pn-II
Engineered: Yes
Mutation: Yes
 Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 61 2 2
R_factor 0.245 R_Free 0.276
crystal
cell
length a length b length c angle alpha angle beta angle gamma
97.649 97.649 97.781 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
ligand JEF, ORN, SAR enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceX-ray Crystallographic Structures of a Trimer, Dodecamer, and Annular Pore Formed by an Abeta17-36 beta-Hairpin., Kreutzer AG, Hamza IL, Spencer RK, Nowick JS, J Am Chem Soc. 2016 Apr 6;138(13):4634-42. doi: 10.1021/jacs.6b01332. Epub 2016, Mar 29. PMID:26967810
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk]
  • Biological Unit Coordinates (5hoy.pdb1.gz) 122 Kb
  • Biological Unit Coordinates (5hoy.pdb2.gz) 31 Kb
  • Biological Unit Coordinates (5hoy.pdb3.gz) 60 Kb
  • Biological Unit Coordinates (5hoy.pdb4.gz) 33 Kb
  • Biological Unit Coordinates (5hoy.pdb5.gz) 64 Kb
  • LPC: Ligand-Protein Contacts for 5HOY
  • CSU: Contacts of Structural Units for 5HOY
  • Structure Factors (267 Kb)
  • Retrieve 5HOY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5HOY from S2C, [Save to disk]
  • Re-refined 5hoy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5HOY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5HOY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5hoy_A] [5hoy_C] [5hoy_D] [5hoy_B] [5hoy_E] [5hoy_F] [5hoy]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5HOY
  • Community annotation for 5HOY at PDBWiki (http://pdbwiki.org)

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