5HU9 Transferase Transferase Inhibitor date Jan 27, 2016
title Crystal Structure Of Abl1 In Complex With Chmfl-074
authors L.L.Kong, C.H.Yun
compound source
Molecule: Tyrosine-Protein Kinase Abl1
Chain: A
Fragment: Unp Residues 229-500
Synonym: Abelson Murine Leukemia Viral Oncogene Homolog 1,A Tyrosine-Protein Kinase 1,Proto-Oncogene C-Abl,P150;
Ec: 2.7.10.2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Abl1, Abl, Jtk7
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_strain: Sf9
symmetry Space Group: C 2 2 21
R_factor 0.186 R_Free 0.196
crystal
cell
length a length b length c angle alpha angle beta angle gamma
37.852 108.435 146.295 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.53 Å
ligand 66K, CL, EDO enzyme Transferase E.C.2.7.10.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDiscovery and characterization of a novel potent type II native and mutant BCR-ABL inhibitor (CHMFL-074) for Chronic Myeloid Leukemia (CML)., Liu F, Wang B, Wang Q, Qi Z, Chen C, Kong LL, Chen JY, Liu X, Wang A, Hu C, Wang W, Wang H, Wu F, Ruan Y, Qi S, Liu J, Zou F, Hu Z, Wang W, Wang L, Zhang S, Yun CH, Zhai Z, Liu J, Liu Q, Oncotarget. 2016 Jun 14. doi: 10.18632/oncotarget.10037. PMID:27322145
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk]
  • Biological Unit Coordinates (5hu9.pdb1.gz) 56 Kb
  • LPC: Ligand-Protein Contacts for 5HU9
  • CSU: Contacts of Structural Units for 5HU9
  • Structure Factors (532 Kb)
  • Retrieve 5HU9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5HU9 from S2C, [Save to disk]
  • Re-refined 5hu9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5HU9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5HU9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5hu9] [5hu9_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5HU9: [TyrKc ] by SMART
  • Other resources with information on 5HU9
  • Community annotation for 5HU9 at PDBWiki (http://pdbwiki.org)

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