5HZZ Hydrolase date Feb 03, 2016
title Crystal Structure Of Dr2231_e47a Mutant In Complex With Dump Manganese
authors C.S.Mota, A.M.D.Goncalves, D.De Sanctis
compound source
Molecule: Dr2231
Chain: A, B, C, D
Engineered: Yes
 Organism_scientific: Deinococcus Radiodurans (Strain Atcc 1 Dsm 20539 Jcm 16871 Lmg 4051 Nbrc 15346 Ncimb 9279 Vkm B-1422);
Organism_taxid: 243230
Gene: Dr_2231
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet151d-Topo
symmetry Space Group: P 21 21 2
R_factor 0.163 R_Free 0.207
crystal
cell
length a length b length c angle alpha angle beta angle gamma
150.452 77.893 52.597 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand MN, UMP enzyme
Gene DR
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceDeinococcus radiodurans DR2231 is a two-metal-ion mechanism hydrolase with exclusive activity on dUTP., Mota CS, Goncalves AM, de Sanctis D, FEBS J. 2016 Oct 14. doi: 10.1111/febs.13923. PMID:27739259
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (198 Kb) [Save to disk]
  • Biological Unit Coordinates (5hzz.pdb1.gz) 95 Kb
  • Biological Unit Coordinates (5hzz.pdb2.gz) 96 Kb
  • LPC: Ligand-Protein Contacts for 5HZZ
  • CSU: Contacts of Structural Units for 5HZZ
  • Structure Factors (3742 Kb)
  • Retrieve 5HZZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5HZZ from S2C, [Save to disk]
  • Re-refined 5hzz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5HZZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5HZZ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5hzz_D] [5hzz_C] [5hzz_B] [5hzz] [5hzz_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5HZZ
  • Community annotation for 5HZZ at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science