5I12 Hydrolase date Feb 05, 2016
title Crystal Structure Of The Catalytic Domain Of Mmp-9 In Comple Selective Sugar-Conjugated Arylsulfonamide Carboxylate Wate Inhibitor (Dc27).
authors E.A.Stura, L.Rosalia, D.Cuffaro, L.Tepshi, L.Ciccone, A.Rossello
compound source
Molecule: Matrix Metalloproteinase-9,Matrix Metalloproteina
Chain: A
Fragment: Unp Residues 113-216,Unp Residues 392-444,Unp Res 216,Unp Residues 392-444;
Synonym: Mmp-9,92 Kda Gelatinase,92 Kda Type Iv Collagenase Gelatinase B,Gelb,Mmp-9,92 Kda Gelatinase,92 Kda Type Iv Co Gelatinase B,Gelb;
Ec: 3.4.24.35,3.4.24.35
Engineered: Yes
Other_details: Mmp-9 Catalytic Domain Without Fibronectin T Domains
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell: Neutrophil
Gene: Mmp9, Clg4b
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 32 2 1
R_factor 0.188 R_Free 0.228
crystal
cell
length a length b length c angle alpha angle beta angle gamma
39.560 39.560 163.550 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.59 Å
ligand CA, DMS, EDO, GOL, H27, ZN enzyme Hydrolase E.C.3.4.24.35 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (68 Kb) [Save to disk]
  • Biological Unit Coordinates (5i12.pdb1.gz) 62 Kb
  • LPC: Ligand-Protein Contacts for 5I12
  • CSU: Contacts of Structural Units for 5I12
  • Structure Factors (427 Kb)
  • Retrieve 5I12 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5I12 from S2C, [Save to disk]
  • Re-refined 5i12 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5I12 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5I12
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5i12_A] [5i12]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5I12: [ZnMc ] by SMART
  • Other resources with information on 5I12
  • Community annotation for 5I12 at PDBWiki (http://pdbwiki.org)

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