5I2L Metal Binding Protein date Feb 09, 2016
title Structure Of Ef-Hand Containing Protein
authors K.R.Park, M.S.Kwon, J.Y.An, J.G.Lee, H.S.Youn, Y.Lee, J.Y.Kang, T.G J.J.Lim, J.S.Park, S.H.Lee, W.K.Song, H.Cheong, C.Jun, S.H.Eom
compound source
Molecule: Ef-Hand Domain-Containing Protein D2
Chain: A
Fragment: Unp Residues 70-184
Synonym: Swiprosin-1
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Efhd2, Sws1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: P 21 21 21
R_factor 0.162 R_Free 0.207
crystal
cell
length a length b length c angle alpha angle beta angle gamma
37.325 50.670 53.381 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.85 Å
ligand CA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural implications of Ca2+-dependent actin-bundling function of human EFhd2/Swiprosin-1., Park KR, Kwon MS, An JY, Lee JG, Youn HS, Lee Y, Kang JY, Kim TG, Lim JJ, Park JS, Lee SH, Song WK, Cheong HK, Jun CD, Eom SH, Sci Rep. 2016 Dec 15;6:39095. doi: 10.1038/srep39095. PMID:27974828
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (5i2l.pdb1.gz) 37 Kb
  • LPC: Ligand-Protein Contacts for 5I2L
  • CSU: Contacts of Structural Units for 5I2L
  • Structure Factors (183 Kb)
  • Retrieve 5I2L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5I2L from S2C, [Save to disk]
  • Re-refined 5i2l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5I2L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5I2L
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5i2l] [5i2l_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5I2L
  • Community annotation for 5I2L at PDBWiki (http://pdbwiki.org)

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