5I2M Membrane Protein date Feb 09, 2016
title Crystal Structure Of Vsv-Indiana (Mudd-Summers Strain) Glyco Under Its Acidic Conformation
authors S.Roche, S.Bressanelli
compound source
Molecule: Glycoprotein G
Chain: A, B, C
 Organism_scientific: Vesicular Stomatitis Indiana Virus (St Mudd-Summers);
Organism_common: Vsiv
Organism_taxid: 11279
Strain: Mudd-Summers
symmetry Space Group: C 2 2 21
R_factor 0.183 R_Free 0.215
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.270 224.200 375.740 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand CA, PE4 enzyme
note 5I2M supersedes 2CMZ
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceCrystal structure of the low-pH form of the vesicular stomatitis virus glycoprotein G., Roche S, Bressanelli S, Rey FA, Gaudin Y, Science. 2006 Jul 14;313(5784):187-91. PMID:16840692
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (436 Kb) [Save to disk]
  • Biological Unit Coordinates (5i2m.pdb1.gz) 428 Kb
  • LPC: Ligand-Protein Contacts for 5I2M
  • CSU: Contacts of Structural Units for 5I2M
  • Structure Factors (1585 Kb)
  • Retrieve 5I2M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5I2M from S2C, [Save to disk]
  • Re-refined 5i2m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5I2M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5I2M
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5i2m] [5i2m_A] [5i2m_B] [5i2m_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5I2M
  • Community annotation for 5I2M at PDBWiki (http://pdbwiki.org)

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