5I9F Rna Binding Protein Rna date Feb 20, 2016
title Crystal Structure Of Designed Pentatricopeptide Repeat Prote U10 In Complex With Its Target Rna U10
authors C.Shen, D.Zhang, Z.Guan, T.Zou, Y.Yin
compound source
Molecule: Pentatricopeptide Repeat Protein Dppr-U10
Chain: A
Engineered: Yes
 Organism_scientific: Unidentified
Organism_taxid: 32644
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)

Molecule: Rna (5'- R(Gpgpgpgpupupupupupupupupupupcpcpcpc)-3'
Chain: F
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 21 21 21
R_factor 0.250 R_Free 0.299
crystal
cell
length a length b length c angle alpha angle beta angle gamma
52.732 85.266 95.104 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.19 Å
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (137 Kb) [Save to disk]
  • Biological Unit Coordinates (5i9f.pdb1.gz) 132 Kb
  • CSU: Contacts of Structural Units for 5I9F
  • Structure Factors (392 Kb)
  • Retrieve 5I9F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5I9F from S2C, [Save to disk]
  • Re-refined 5i9f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5I9F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5I9F
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5i9f_F] [5i9f] [5i9f_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5I9F
  • Community annotation for 5I9F at PDBWiki (http://pdbwiki.org)

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