5I9K Transferase date Feb 20, 2016
title The Structure Of Microsomal Glutathione Transferase 1
authors Q.Kuang, P.Purhonen, C.Jegerschold, R.Morgenstern, H.Hebert
compound source
Molecule: Microsomal Glutathione S-Transferase 1
Chain: A
Synonym: Microsomal Gst-1,Microsomal Gst-I
Ec: 2.5.1.18
Engineered: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Gene: Mgst1, Gst12
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Psp19t7lt
symmetry Space Group: P 6
R_factor 0.270 R_Free 0.289
crystal
cell
length a length b length c angle alpha angle beta angle gamma
81.800 81.800 100.000 90.00 90.00 120.00
method Electron Crystallographyresolution 3.50 Å
ligand GSH, PC1, PLM enzyme Transferase E.C.2.5.1.18 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • glutathione peroxidase activ...


  • Primary referenceDead-end complex, lipid interactions and catalytic mechanism of microsomal glutathione transferase 1, an electron crystallography and mutagenesis investigation., Kuang Q, Purhonen P, Alander J, Svensson R, Hoogland V, Winerdal J, Spahiu L, Ottosson-Wadlund A, Jegerschold C, Morgenstern R, Hebert H, Sci Rep. 2017 Aug 11;7(1):7897. doi: 10.1038/s41598-017-07912-3. PMID:28801553
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (26 Kb) [Save to disk]
  • Biological Unit Coordinates (5i9k.pdb1.gz) 60 Kb
  • LPC: Ligand-Protein Contacts for 5I9K
  • CSU: Contacts of Structural Units for 5I9K
  • Structure Factors (100 Kb)
  • Retrieve 5I9K in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5I9K from S2C, [Save to disk]
  • Re-refined 5i9k structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5I9K in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5I9K
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5i9k_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5I9K
  • Community annotation for 5I9K at PDBWiki (http://pdbwiki.org)

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