5IC4	Hydrolase Hydrolase Inhibitor	date	Feb 22, 2016
title	Crystal Structure Of Caspase-3 Deve Peptide Complex
authors	J.E.Seaman, O.Julien, P.S.Lee, T.J.Rettenmaier, N.D.Thomsen, J.A.
compound		source
Molecule: Caspase-3 Subunit P17 Chain: A, C, E, G Synonym: Casp-3,Apopain,Cysteine Protease Cpp32,Cpp-32,Prot Srebp Cleavage Activity 1,Sca-1; Ec: 3.4.22.56 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Casp3, Cpp32 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Caspase-3 Subunit P12 Chain: B, D, F, H Synonym: Casp-3,Apopain,Cysteine Protease Cpp32,Cpp-32,Prot Srebp Cleavage Activity 1,Sca-1; Ec: 3.4.22.56 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Casp3, Cpp32 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Deve Peptide Chain: I, J, K, L Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
symmetry	Space Group: F 2 2 2	R_factor 0.207 R_Free 0.239
crystal cell	length a length b length c angle alpha angle beta angle gamma 133.820 177.796 193.430 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.65 Å
ligand	MKE	enzyme	Hydrolase E.C.3.4.22.56 BRENDA
Gene Ontology	Chain Function Process Component A, E, C, G F, B, H, D
Primary reference	Cacidases: caspases can cleave after aspartate, glutamate and phosphoserine residues., Seaman JE, Julien O, Lee PS, Rettenmaier TJ, Thomsen ND, Wells JA, Cell Death Differ. 2016 Jul 1. doi: 10.1038/cdd.2016.62. PMID:27367566

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (313 Kb) [Save to disk] Biological Unit Coordinates (5ic4.pdb1.gz) 154 Kb Biological Unit Coordinates (5ic4.pdb2.gz) 154 Kb LPC: Ligand-Protein Contacts for 5IC4 CSU: Contacts of Structural Units for 5IC4 Structure Factors (297 Kb) Retrieve 5IC4 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5IC4 from S2C, [Save to disk] Re-refined 5ic4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5IC4 in 3D

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Visual 3D analysis of 5IC4

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5ic4_C] [5ic4_A] [5ic4_K] [5ic4_D] [5ic4_L] [5ic4_E] [5ic4] [5ic4_B] [5ic4_I] [5ic4_J] [5ic4_G] [5ic4_H] [5ic4_F] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5IC4: [CASc ] by SMART

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