5IG6 Transcription date Feb 27, 2016
title Ultra-High Resolution Crystal Structure Of Second Bromodomai In Complex With Inhibitor 6b3
authors S.K.Tripathi, B.Padmanabhan
compound source
Molecule: Bromodomain-Containing Protein 2
Chain: A
Fragment: Unp Residues 348-454
Synonym: O27.1.1,Really Interesting New Gene 3 Protein
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Brd2, Kiaa9001, Ring3
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: P 2 21 21
R_factor 0.125 R_Free 0.143
crystal
cell
length a length b length c angle alpha angle beta angle gamma
32.000 52.370 71.460 90.00 90.00 90.00
method X-Ray Diffractionresolution 0.91 Å
ligand 6B3, CL, GOL enzyme
Primary referenceA Novel Phenanthridionone Based Scaffold As a Potential Inhibitor of the BRD2 Bromodomain: Crystal Structure of the Complex., Tripathi S, Mathur S, Deshmukh P, Manjula R, Padmanabhan B, PLoS One. 2016 May 31;11(5):e0156344. doi: 10.1371/journal.pone.0156344., eCollection 2016. PMID:27243809
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk]
  • Biological Unit Coordinates (5ig6.pdb1.gz) 53 Kb
  • LPC: Ligand-Protein Contacts for 5IG6
  • CSU: Contacts of Structural Units for 5IG6
  • Structure Factors (1016 Kb)
  • Retrieve 5IG6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5IG6 from S2C, [Save to disk]
  • Re-refined 5ig6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5IG6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5IG6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ig6] [5ig6_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5IG6: [BROMO ] by SMART
  • Other resources with information on 5IG6
  • Community annotation for 5IG6 at PDBWiki (http://pdbwiki.org)

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