5II6 Cell Adhesion date Mar 01, 2016
title Crystal Structure Of The Zp-N1 Domain Of Mouse Sperm Recepto 0.95 A Resolution
authors E.Dioguardi, L.Han, K.Nishimura, D.De Sanctis, L.Jovine
compound source
Molecule: Zona Pellucida Sperm-Binding Protein 2
Chain: A
Fragment: Unp Residues 35-138
Synonym: Zona Pellucida Glycoprotein 2,Zp-2,Zona Pellucida
Engineered: Yes
Mutation: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Zp2, Zp-2, Zpa
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek-293t
Expression_system_vector_type: Plasmid
Expression_system_vector: Phlsec
symmetry Space Group: P 21 21 21
R_factor 0.127 R_Free 0.145
crystal
cell
length a length b length c angle alpha angle beta angle gamma
39.539 50.013 51.751 90.00 90.00 90.00
method X-Ray Diffractionresolution 0.95 Å
Primary referenceStructural Basis of Egg Coat-Sperm Recognition at Fertilization., Raj I, Sadat Al Hosseini H, Dioguardi E, Nishimura K, Han L, Villa A, de Sanctis D, Jovine L, Cell. 2017 Jun 15;169(7):1315-1326.e17. doi: 10.1016/j.cell.2017.05.033. PMID:28622512
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (66 Kb) [Save to disk]
  • Biological Unit Coordinates (5ii6.pdb1.gz) 62 Kb
  • CSU: Contacts of Structural Units for 5II6
  • Structure Factors (814 Kb)
  • Retrieve 5II6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5II6 from S2C, [Save to disk]
  • Re-refined 5ii6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5II6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5II6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ii6_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5II6
  • Community annotation for 5II6 at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science