5ILM Oxygen Transport date Mar 04, 2016
title H64a Sperm Whale Myoglobin With A Fe-Chlorophenyl Moiety
authors B.Wang, L.M.Thomas, G.B.Richter-Addo
compound source
Molecule: Myoglobin
Chain: A
Engineered: Yes
Mutation: Yes
 Organism_scientific: Physeter Catodon
Organism_common: Sperm Whale
Organism_taxid: 9755
Gene: Mb
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pet28a
symmetry Space Group: P 6
R_factor 0.152 R_Free 0.192
crystal
cell
length a length b length c angle alpha angle beta angle gamma
90.599 90.599 45.121 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.70 Å
ligand 4HE, GOL, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceOrganometallic myoglobins: Formation of Fe-carbon bonds and distal pocket effects on aryl ligand conformations., Wang B, Thomas LM, Richter-Addo GB, J Inorg Biochem. 2016 Jun 24. pii: S0162-0134(16)30192-1. doi:, 10.1016/j.jinorgbio.2016.06.028. PMID:27687333
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (38 Kb) [Save to disk]
  • Biological Unit Coordinates (5ilm.pdb1.gz) 32 Kb
  • LPC: Ligand-Protein Contacts for 5ILM
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  • Structure Factors (1260 Kb)
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  • SEQRES to COORDINATES correlation for 5ILM from S2C, [Save to disk]
  • Re-refined 5ilm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
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  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ilm] [5ilm_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5ILM
  • Community annotation for 5ILM at PDBWiki (http://pdbwiki.org)

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