5IWH Hydrolase date Mar 22, 2016
title Structure Of P. Vulgaris Higb Toxin Delta H92
authors M.A.Schureck, A.A.Repack, S.J.Miles, J.Marquez, C.M.Dunham
compound source
Molecule: Endoribonuclease Higb
Chain: A
Synonym: Host Inhibition Of Growth Protein B,Killer Protein Higb,Mrna Interferase Higb;
Ec: 3.1.-.-
Engineered: Yes
 Organism_scientific: Proteus Vulgaris
Organism_taxid: 585
Variant: Delta H92
Gene: Higb
Expression_system: Escherichia Coli Bw25113
Expression_system_taxid: 679895
symmetry Space Group: C 1 2 1
R_factor 0.138 R_Free 0.169
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.776 33.166 51.492 90.00 115.49 90.00
method X-Ray Diffractionresolution 1.10 Å
ligand CL enzyme Hydrolase E.C.3.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceMechanism of endonuclease cleavage by the HigB toxin., Schureck MA, Repack A, Miles SJ, Marquez J, Dunham CM, Nucleic Acids Res. 2016 Jul 4. pii: gkw598. PMID:27378776
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk]
  • Biological Unit Coordinates (5iwh.pdb1.gz) 41 Kb
  • LPC: Ligand-Protein Contacts for 5IWH
  • CSU: Contacts of Structural Units for 5IWH
  • Structure Factors (295 Kb)
  • Retrieve 5IWH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5IWH from S2C, [Save to disk]
  • Re-refined 5iwh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5IWH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5IWH
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5iwh_A] [5iwh]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5IWH
  • Community annotation for 5IWH at PDBWiki (http://pdbwiki.org)

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