5IWJ Dna date Mar 22, 2016
title Lambda-[Ru(Tap)2(Dppz)]2+ Bound To D(Ccgggcccgg
authors J.E.Souter, J.P.Hall, C.J.Cardin
compound source
Molecule: Dna (5'-D(Cpcpgpgpgpcpcpcpgpg)-3')
Chain: C
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 43 21 2
R_factor 0.210 R_Free 0.277
crystal
cell
length a length b length c angle alpha angle beta angle gamma
46.783 46.783 34.948 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.88 Å
ligand BA, RKL enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (10 Kb) [Save to disk]
  • Biological Unit Coordinates (5iwj.pdb1.gz) 10 Kb
  • LPC: Ligand-Protein Contacts for 5IWJ
  • CSU: Contacts of Structural Units for 5IWJ
  • Structure Factors (74 Kb)
  • Retrieve 5IWJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5IWJ from S2C, [Save to disk]
  • Re-refined 5iwj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5IWJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5IWJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5iwj_C] [5iwj]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5IWJ
  • Community annotation for 5IWJ at PDBWiki (http://pdbwiki.org)

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