5IXD	Cytokine	date	Mar 23, 2016
title	Structure Of Human Jak1 Fermsh2 In Complex With Ifn Lambda
authors	R.Ferrao, H.J.A.Wallweber, P.J.Lupardus
compound		source
Molecule: Tyrosine-Protein Kinase Jak1 Chain: A Fragment: Unp Residues 35-559 Synonym: Janus Kinase 1,Jak-1 Ec: 2.7.10.2 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Jak1, Jak1a, Jak1b Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Baculovirus
Molecule: Interferon Lambda Receptor 1 Chain: B Fragment: Unp Residues 250-299 Synonym: Ifn-Lambda-R1,Cytokine Receptor Class-II Member 12 Receptor Family 2 Member 12,Crf2-12,Interleukin-28 Receptor Alpha,Il-28ra,Likely Interleukin Or Cytokine Receptor 2,Lic Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ifnlr1, Il28ra, Licr2 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Baculovirus
symmetry	Space Group: C 2 2 21	R_factor 0.249 R_Free 0.282
crystal cell	length a length b length c angle alpha angle beta angle gamma 111.170 193.200 72.980 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.85 Å
ligand	CIT	enzyme	Transferase E.C.2.7.10.2 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	The Structural Basis for Class II Cytokine Receptor Recognition by JAK1., Ferrao R, Wallweber HJ, Ho H, Tam C, Franke Y, Quinn J, Lupardus PJ, Structure. 2016 Apr 27. pii: S0969-2126(16)30034-X. doi:, 10.1016/j.str.2016.03.023. PMID:27133025

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (158 Kb) [Save to disk] Biological Unit Coordinates (5ixd.pdb1.gz) 151 Kb LPC: Ligand-Protein Contacts for 5IXD CSU: Contacts of Structural Units for 5IXD Structure Factors (174 Kb) Retrieve 5IXD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5IXD from S2C, [Save to disk] Re-refined 5ixd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5IXD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5IXD

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5ixd] [5ixd_A] [5ixd_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 5IXD: [B41] [SH2 ] by SMART

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