5J2R Protein Binding date Mar 29, 2016
title Solution Structure Of Ras Binding Domain (Rbd) Of B-Raf
authors K.Dutta, R.Vasquez-Del Carpio, A.K.Aggarwal, E.P.Reddy
compound source
Molecule: Serinethreonine-Protein Kinase B-Raf
Chain: A
Fragment: Residues 151-232
Synonym: Proto-Oncogene B-Raf,P94,V-Raf Murine Sarcoma Vira Homolog B1;
Ec: 2.7.11.1
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Braf, Braf1, Rafb1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21 De3 Plyss
methodSolution NMR
ligand 6FS enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA Small Molecule RAS-Mimetic Disrupts RAS Association with Effector Proteins to Block Signaling., Athuluri-Divakar SK, Vasquez-Del Carpio R, Dutta K, Baker SJ, Cosenza SC, Basu I, Gupta YK, Reddy MV, Ueno L, Hart JR, Vogt PK, Mulholland D, Guha C, Aggarwal AK, Reddy EP, Cell. 2016 Apr 21;165(3):643-55. doi: 10.1016/j.cell.2016.03.045. PMID:27104980
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (264 Kb) [Save to disk]
  • Biological Unit Coordinates (5j2r.pdb1.gz) 27 Kb
  • LPC: Ligand-Protein Contacts for 5J2R
  • CSU: Contacts of Structural Units for 5J2R
  • Original NMR restraints for 5J2R from PDB
  • Retrieve 5J2R in mmCIF format [Save to disk]
    • View 5J2R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5J2R
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5j2r_A] [5j2r]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5J2R: [RBD ] by SMART
    • Other resources with information on 5J2R
  • Community annotation for 5J2R at PDBWiki (http://pdbwiki.org)

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