5J4I Transport Protein date Apr 01, 2016
title Crystal Structure Of The L-Arginineagmatine Antiporter From At 2.2 Angstroem Resolution
authors J.M.Jeckelmann, H.Ilgue, D.Fotiadis
compound source
Molecule: Arginineagmatine Antiporter
Chain: A, B
Engineered: Yes
 Organism_scientific: Escherichia Coli O157:H7
Organism_taxid: 83334
Gene: Adic, Z5717, Ecs5097
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21
symmetry Space Group: P 21 21 2
R_factor 0.197 R_Free 0.210
crystal
cell
length a length b length c angle alpha angle beta angle gamma
104.739 175.424 73.148 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.21 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • arginine transmembrane trans...


    • Primary referenceInsights into the molecular basis for substrate binding and specificity of the wild-type L-arginine/agmatine antiporter AdiC., Ilgu H, Jeckelmann JM, Gapsys V, Ucurum Z, de Groot BL, Fotiadis D, Proc Natl Acad Sci U S A. 2016 Aug 31. pii: 201605442. PMID:27582465
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (276 Kb) [Save to disk]
  • Biological Unit Coordinates (5j4i.pdb1.gz) 269 Kb
  • CSU: Contacts of Structural Units for 5J4I
  • Structure Factors (1843 Kb)
  • Retrieve 5J4I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5J4I from S2C, [Save to disk]
  • Re-refined 5j4i structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5J4I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5J4I
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5j4i_A] [5j4i_B] [5j4i]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5J4I
  • Community annotation for 5J4I at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science